Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs61986059 | chr14:59758310 | G/T | 1.4E-8 | 488 | 16.38 | 12.62 | 5.45 | KM Plot |
| THCA | rs61989064 | chr14:90864418 | A/C | 8.82E-9 | 479 | 14.8 | 15.27 | 15.9 | KM Plot |
| THCA | rs61990749 | chr14:78372501 | G/C | 4.88E-6 | 471 | 15.95 | 17.13 | 11.88 | KM Plot |
| THCA | rs62013106 | chr15:65837277 | T/C | 0.000148 | 483 | 15.67 | 15.83 | 18.33 | KM Plot |
| THCA | rs62013107 | chr15:65840463 | A/G | 0.000147 | 482 | 15.67 | 15.9 | 18.33 | KM Plot |
| THCA | rs62023456 | chr15:90305896 | C/T | 0 | 487 | 15.75 | 17 | 8.73 | KM Plot |
| THCA | rs62101271 | chr19:34559653 | C/T | 4.02E-9 | 487 | 15.9 | 16.22 | 10.6 | KM Plot |
| THCA | rs62101272 | chr19:34559991 | G/A | 4.02E-9 | 487 | 15.9 | 16.22 | 10.6 | KM Plot |
| THCA | rs62101273 | chr19:34560832 | C/A | 4.02E-9 | 487 | 15.9 | 16.22 | 10.6 | KM Plot |
| THCA | rs62101274 | chr19:34562332 | C/T | 4.02E-9 | 487 | 15.9 | 16.22 | 10.6 | KM Plot |
| THCA | rs62101275 | chr19:34567354 | C/T | 3.85E-9 | 487 | 15.9 | 16.22 | 10.6 | KM Plot |
| THCA | rs62101277 | chr19:34569061 | G/A | 3.85E-9 | 488 | 15.9 | 16.22 | 10.6 | KM Plot |
| THCA | rs62201527 | chr2:196739903 | C/T | 1.34E-6 | 481 | 15.78 | 16.23 | 12.08 | KM Plot |
| THCA | rs62204768 | chr2:216204073 | C/T | 3.78E-9 | 484 | 16.67 | 15.17 | 12.6 | KM Plot |
| THCA | rs62273542 | chr3:111265426 | T/C | 6.56E-5 | 488 | 16.27 | 14.97 | 16.55 | KM Plot |